CIS Department Talk- November 8, 2004
The Department of Computer and Information Science & The Society of
Computer Science Present
Distinguished Lecture Series in Computational Sciences
Speaker: | Dr. Ying Xu, Institute of Bioinformatics and
Department of Biochemistry and Molecular Biology, University of Georgia
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Topic: | Computational Inference of Biological Networds in
Microbes
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Date: | Monday, November 8, 2004; 2:30pm - 3:30pm |
Place: | John Mulcahy Hall, Room 404 |
Refreshments: | John Mulcahy Hall, Room 312 at 1:00pm |
Abstract:
In this talk, I will present our recent work on a computational framework for
inference and prediction of biological networks in microbes. Our
network-inference methods includes four key components: (a) construction of
template networks in genomes with great amount of experimental data, (b)
mapping template networks to a target genome, (c) network refinement using
information derived through mining genome sequences and microarray data, and
(d) experimental validation of predicted network models. We have developed a
suite of computational tools in support of our network predictions. These
tools include (1) operon and regulon structure predictions, (2) prediction of
transcription regulatory elements, (3) prediction of protein-protein
interactions and protein-DNA interactions, etc. I will touch on some of the
basic computational issues involved in the development of these tools.
Bio:
Ying Xu is a chair professor of bioinformatics and computational biology in
the Biochemistry and Molecular Biology Department, and the director of the
Institute of Bioinformatics, University of Georgia (UGA). Before joining UGA
in September, 2003, he was a senior staff scientist and group leader at Oak
Ridge National Laboratory (ORNL), where he still holds a joint position. He
received his Ph.D. degree in theoretical computer science from the University
of Colorado at Boulder in 1991. Between 1991 and 1993, he was a visiting
assistant professor at the Colorado School of Mines. He started his
bioinformatics career in 1993 when he joined Ed Uberbacher's group at ORNL to
work on the GRAIL project. Since then, he has been working in the field of
bioinformatics and computation biology. His current research interests
include (a) protein structure prediction and modeling, (b) computational
inference of biological pathways, (c) large-scale biological data mining, and
(d) cancer bioinformatics. He is interested in both development of
bioinformatics tools and study of biological problems using in silico
approaches. He has over 100 publications in the open literature, including
two books in bioinformatics ("Current Topics in Computational Molecular
Biology", MIT Press, 2002) and genomics ("Microbial Functional Genomics", John
Wiley and Sons, March 2004). He has also given over 90 invited/contributed
talks at conferences, workshops, research organizations and universities. In
2003-2004, he is the Program Committee (co)Chair of the IEEE Computational
Systems Bioinformatics Conference (CSB'04), and a Subject-area Chair in the
Program Committee of the joint ISMB/ECCB conference in 2004. He currently
serves on the editorial boards of three international journals. He has also
served on review panels/study sessions for major funding agencies such as NSF,
NIH and DOE.
For more information, contact:
Ms. Diane Roche (718) 817-4480 (roche@cis.fordham.edu)
Ms. Michelle Ciraco (mciraco@optonline.net)
Mr. Michael Rogalewski; (rogalewski@fordham.edu)
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